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ENZYME

ENZYME entry: EC 3.5.1.88

Accepted Name
peptide deformylase
Alternative Name(s)
PDF
polypeptide deformylase
Reaction catalysed
H2O + N-terminal N-formyl-L-methionyl-[peptide] <=> formate + N-terminal L-methionyl-[peptide]
Comment(s)
  • Requires Fe(II).
  • Also requires at least a dipeptide for an efficient rate of reaction.
  • N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
  • Differs in substrate specificity from EC 3.5.1.31.
Cross-references
BRENDA3.5.1.88
EC2PDB3.5.1.88
ExplorEnz3.5.1.88
PRIAM enzyme-specific profiles3.5.1.88
KEGG Ligand Database for Enzyme Nomenclature3.5.1.88
IUBMB Enzyme Nomenclature3.5.1.88
IntEnz3.5.1.88
MEDLINEFind literature relating to 3.5.1.88
MetaCyc3.5.1.88
Rhea expert-curated reactions3.5.1.88
UniProtKB/Swiss-Prot
Q9FV53, DEF1A_ARATHB6RGY0, DEF1A_ORYSJQ9FUZ0, DEF1A_SOLLC
Q9FUZ2, DEF1B_ARATHQ5VNN5, DEF1B_ORYSJQ9FV54, DEF1B_SOLLC
Q81WH1, DEF1_BACANQ819U0, DEF1_BACCRP94462, DEF1_BACSU
Q8G534, DEF1_BIFLOQ7WQS9, DEF1_BORBRQ7W1V3, DEF1_BORPA
Q7W0Q0, DEF1_BORPEA0A0H3KB98, DEF1_BURM1O05100, DEF1_CLOAB
Q8XJL2, DEF1_CLOPEQ8FT51, DEF1_COREFQ8NQ46, DEF1_CORGL
Q83CV9, DEF1_COXBUQ7NJV3, DEF1_GLOVIQ82TW4, DEF1_NITEU
Q8YSK6, DEF1_NOSS1Q7V8G6, DEF1_PROMMQ88RR1, DEF1_PSEPK
Q88B43, DEF1_PSESMQ8Y3B0, DEF1_RALSOQ92IZ1, DEF1_RICCN
Q8EKQ8, DEF1_SHEONQ82IV0, DEF1_STRAWQ9RD27, DEF1_STRCO
Q9KVU3, DEF1_VIBCHQ87KD5, DEF1_VIBPAQ8DDE3, DEF1_VIBVU
Q7MCQ2, DEF1_VIBVYQ8PGV2, DEF1_XANACQ8PCN7, DEF1_XANCP
Q81MQ9, DEF2_BACANQ819K2, DEF2_BACCRQ45495, DEF2_BACSU
Q8G487, DEF2_BIFLOQ7WG25, DEF2_BORBRQ7W4K0, DEF2_BORPA
Q7VS88, DEF2_BORPEQ97G95, DEF2_CLOABQ8XJX0, DEF2_CLOPE
Q8FMD0, DEF2_COREFQ8NM41, DEF2_CORGLQ83AK6, DEF2_COXBU
O31410, DEF2_GEOSEQ7NIF5, DEF2_GLOVIQ82TC8, DEF2_NITEU
Q8YVH1, DEF2_NOSS1Q7V5F9, DEF2_PROMMQ88EA7, DEF2_PSEPK
Q886I1, DEF2_PSESMQ8XZJ6, DEF2_RALSOQ92JI7, DEF2_RICCN
Q8EHZ2, DEF2_SHEONQ826Q0, DEF2_STRAWQ9FCA2, DEF2_STRCO
Q9KN16, DEF2_VIBCHQ87I22, DEF2_VIBPAQ8D5P5, DEF2_VIBVU
Q7MGK6, DEF2_VIBVYQ8PG20, DEF2_XANACQ8P4F9, DEF2_XANCP
Q8EE60, DEF3_SHEONQ825U9, DEF3_STRAWQ9XAQ2, DEF3_STRCO
Q9K4A0, DEF4_STRCOQ9HBH1, DEFM_HUMANS4R2K0, DEFM_MOUSE
A3DCX4, DEF_ACET2B0VNL8, DEF_ACIBSA0LUE1, DEF_ACIC1
C1F541, DEF_ACIC5B3GYT7, DEF_ACTP7A4ST57, DEF_AERS4
B6JJP8, DEF_AFIC5C4ZEV9, DEF_AGARVQ8UID1, DEF_AGRFC
Q0VTE1, DEF_ALCBSQ5E1Q8, DEF_ALIF1B5FCW6, DEF_ALIFM
B6EP21, DEF_ALISLQ5WFA2, DEF_ALKCKQ0A5B9, DEF_ALKEH
A6TRW8, DEF_ALKMQB4S291, DEF_ALTMDB3ETT4, DEF_AMOA5
O66847, DEF_AQUAEC1DFV8, DEF_AZOVDQ5LEQ9, DEF_BACFN
Q64VP5, DEF_BACFRQ8AAP4, DEF_BACTNA1UUB4, DEF_BARBK
Q6G5F0, DEF_BARHEQ6G1G6, DEF_BARQUA9ILK4, DEF_BART1
Q1LT56, DEF_BAUCHA1A2Z1, DEF_BIFAAQ7VQC0, DEF_BLOFL
Q493I1, DEF_BLOPBO51092, DEF_BORBUQ89BN9, DEF_BRADU
C0QZQ2, DEF_BRAHWA5ESQ7, DEF_BRASBA4YLB9, DEF_BRASO
P63913, DEF_BRUMEP63914, DEF_BRUSUB8D9R9, DEF_BUCA5
P57563, DEF_BUCAIQ8K975, DEF_BUCAPB8D821, DEF_BUCAT
P59493, DEF_BUCBPQ057D2, DEF_BUCCCB9MR36, DEF_CALBD
Q8R9T0, DEF_CALS4Q9PIT8, DEF_CAMJEQ3AC18, DEF_CARHZ
B0T1S9, DEF_CAUSKQ9ABF5, DEF_CAUVCB8GYE3, DEF_CAUVN
B3PGY7, DEF_CELJUQ11LC7, DEF_CHESBA9WHG7, DEF_CHLAA
Q5L6G8, DEF_CHLABB8G5R5, DEF_CHLADQ823U4, DEF_CHLCV
Q253S4, DEF_CHLFFB3EE19, DEF_CHLL2Q3B2U9, DEF_CHLL3
Q9PK41, DEF_CHLMUB3QPU5, DEF_CHLP8B3EPG5, DEF_CHLPB
A1BHK0, DEF_CHLPDA4SFP2, DEF_CHLPMQ9Z6J2, DEF_CHLPN
B9LBS4, DEF_CHLSYB0B7S2, DEF_CHLT2Q3KM05, DEF_CHLTA
B0BBY7, DEF_CHLTBQ8KCG7, DEF_CHLTEO84357, DEF_CHLTR
Q1QTJ5, DEF_CHRSDQ7NQ75, DEF_CHRVOA8AQI1, DEF_CITK8
O08450, DEF_CLOB8B2V4B1, DEF_CLOBAQ895Q2, DEF_CLOTE
A7MPE9, DEF_CROS8Q11X86, DEF_CYTH3Q3Z8F6, DEF_DEHM1
A5FRA7, DEF_DEHMBQ3ZXA9, DEF_DEHMCQ9RRQ4, DEF_DEIRA
C0QI55, DEF_DESAHB8FHH0, DEF_DESALB1I504, DEF_DESAP
B8FS81, DEF_DESHDQ24U09, DEF_DESHYA8ZUK5, DEF_DESOH
Q6AQ98, DEF_DESPSA5EWL8, DEF_DICNVB5YF46, DEF_DICT6
B8E0X7, DEF_DICTDB7UK10, DEF_ECO27B7MCQ2, DEF_ECO45
B7LHY3, DEF_ECO55P0A6K5, DEF_ECO57B5YT06, DEF_ECO5E
B7NLK6, DEF_ECO7IB7N171, DEF_ECO81B7M0Z2, DEF_ECO8A
C4ZUE1, DEF_ECOBWB1X6D9, DEF_ECODHA8A591, DEF_ECOHS
A1AGH8, DEF_ECOK1Q0TCH5, DEF_ECOL5P0A6K4, DEF_ECOL6
B1IQ13, DEF_ECOLCP0A6K3, DEF_ECOLIB7NDQ8, DEF_ECOLU
B6I200, DEF_ECOSEB1LGP3, DEF_ECOSMQ1R646, DEF_ECOUT
C5BF17, DEF_EDWI9B2KD65, DEF_ELUMPB1GZ10, DEF_ENDTX
A4WF95, DEF_ENT38Q82ZJ0, DEF_ENTFAB2VK93, DEF_ERWT9
Q2NCT3, DEF_ERYLHB7LRQ3, DEF_ESCF3B0S139, DEF_FINM2
A5FGV5, DEF_FLAJ1A6H0E7, DEF_FLAPJA8LE21, DEF_FRASN
Q8REF0, DEF_FUSNNB8F726, DEF_GLAP5A0M3P3, DEF_GRAFK
Q7VKK9, DEF_HAEDUQ4QMV6, DEF_HAEI8A5UEB4, DEF_HAEIE
A5UH92, DEF_HAEIGP44786, DEF_HAEINQ0I181, DEF_HAES1
Q2SQX1, DEF_HAHCHQ9K9I9, DEF_HALH5B8CWS6, DEF_HALOH
C4K6Y0, DEF_HAMD5Q17XD4, DEF_HELAHQ7VIN5, DEF_HELHP
B0TGS8, DEF_HELMIB6JM24, DEF_HELP2B5Z7F5, DEF_HELPG
Q1CT77, DEF_HELPHQ9ZL51, DEF_HELPJB2UT38, DEF_HELPS
P56419, DEF_HELPYB0UWZ5, DEF_HISS2Q31J84, DEF_HYDCU
Q0C4V1, DEF_HYPNAQ5QXI5, DEF_IDILOA8Z5V9, DEF_KARMG
B5XNC4, DEF_KLEP3A6TEU0, DEF_KLEP7B3WE13, DEF_LACCB
Q1GAR4, DEF_LACDAQ04B51, DEF_LACDBQ042S1, DEF_LACGA
A8YUR0, DEF_LACH4Q74JW2, DEF_LACJOQ48661, DEF_LACLA
Q039N7, DEF_LACP3A9KM99, DEF_LACP7Q88VB2, DEF_LACPL
Q38WP3, DEF_LATSSB0SHH1, DEF_LEPBAQ04RW4, DEF_LEPBJ
Q051Q7, DEF_LEPBLB0SQM2, DEF_LEPBPQ72S74, DEF_LEPIC
Q93LE9, DEF_LEPINQ03QL3, DEF_LEVBAQ1WU76, DEF_LIGS1
B2GBA3, DEF_LIMF3A5VJ71, DEF_LIMRDB2G6P1, DEF_LIMRJ
Q92CX8, DEF_LISINC1L1X2, DEF_LISMCQ721B5, DEF_LISMF
B8DCF7, DEF_LISMHQ8Y866, DEF_LISMOA0AHG3, DEF_LISW6
B9EB04, DEF_MACCJQ8EVJ8, DEF_MALP2Q65QF2, DEF_MANSM
Q0ASK2, DEF_MARMMB3DUG9, DEF_METI4B8ENG6, DEF_METSB
P94601, DEF_MICDPQ2RK25, DEF_MOOTAB1MIN9, DEF_MYCA9
Q7U206, DEF_MYCBOA1KFQ1, DEF_MYCBPC1AKA5, DEF_MYCBT
Q7NAK8, DEF_MYCGAP47352, DEF_MYCGEA4T2T4, DEF_MYCGI
B8ZSF6, DEF_MYCLBQ9CBI2, DEF_MYCLEB2HQN4, DEF_MYCMM
Q73T03, DEF_MYCPAP75527, DEF_MYCPNQ98PN3, DEF_MYCPU
A0QQP8, DEF_MYCS2A3PTZ4, DEF_MYCSJA1UAD9, DEF_MYCSK
Q1BEJ4, DEF_MYCSSA5TZF5, DEF_MYCTAP9WIJ2, DEF_MYCTO
P9WIJ3, DEF_MYCTUA0PNK2, DEF_MYCUAA1T320, DEF_MYCVP
B2A2K1, DEF_NATTJB9L6X1, DEF_NAUPAQ5F5P6, DEF_NEIG1
A9M464, DEF_NEIM0P63915, DEF_NEIMAP63916, DEF_NEIMB
A1KRE5, DEF_NEIMFQ2GE16, DEF_NEOSMQ1QH78, DEF_NITHX
Q3J6U0, DEF_NITOCQ2G491, DEF_NOVADQ8ER96, DEF_OCEIH
B1ZMD5, DEF_OPITPA5CF65, DEF_ORITBB3CTU1, DEF_ORITI
A6L9R8, DEF_PARD8Q7U9D4, DEF_PARMWP57948, DEF_PASMU
Q6D002, DEF_PECASC6DFR5, DEF_PECCPQ03F09, DEF_PEDPA
B4SBG6, DEF_PELPBA5D1C0, DEF_PELTSQ4FNG1, DEF_PELUB
B4RDT8, DEF_PHEZHQ7MYI2, DEF_PHOLLA6L7J9, DEF_PHOV8
B1XSN2, DEF_POLNSB2RMJ1, DEF_PORG3Q7MT07, DEF_PORGI
B4S9B9, DEF_PROA2A2BZN6, DEF_PROM1A2BU25, DEF_PROM5
Q31DB4, DEF_PROM9Q7VED2, DEF_PROMAQ7V3K7, DEF_PROMP
A2BNK7, DEF_PROMSQ46HV9, DEF_PROMTQ9I7A8, DEF_PSEAE
A8F524, DEF_PSELTA4XNB3, DEF_PSEMYQ3IDI2, DEF_PSET1
Q4FVQ4, DEF_PSYA2Q1QET1, DEF_PSYCKA5WBG1, DEF_PSYWF
Q98D52, DEF_RHILOQ92SH6, DEF_RHIMEA5VDM3, DEF_RHIWR
Q7UHZ5, DEF_RHOBAC1B0D9, DEF_RHOOBQ2J2C6, DEF_RHOP2
Q07TX0, DEF_RHOP5Q6NC51, DEF_RHOPAQ21B62, DEF_RHOPB
Q13F18, DEF_RHOPSB3QCH1, DEF_RHOPTA8GMJ8, DEF_RICAH
A8EXV2, DEF_RICCKQ9ZDV8, DEF_RICPRQ68XG1, DEF_RICTY
A7NPM9, DEF_ROSCSA5US58, DEF_ROSS1Q21PV5, DEF_SACD2
B5F7R3, DEF_SALA4A9MN80, DEF_SALARQ57J64, DEF_SALCH
B5FJI2, DEF_SALDCB5R1E3, DEF_SALEPB5RH49, DEF_SALG2
B4TJX7, DEF_SALHSB4SUQ8, DEF_SALNSQ5PIT8, DEF_SALPA
A9N8B1, DEF_SALPBB5BGV3, DEF_SALPKQ2S316, DEF_SALRD
B4TXB0, DEF_SALSVQ8Z1W9, DEF_SALTIQ8ZLM7, DEF_SALTY
A8GKG5, DEF_SERP5B2U2Q4, DEF_SHIB3Q31VZ0, DEF_SHIBS
Q32B63, DEF_SHIDSQ0T016, DEF_SHIF8Q83PZ1, DEF_SHIFL
Q3YWX3, DEF_SHISSQ2NQQ4, DEF_SODGMQ5HGZ3, DEF_STAAC
P68825, DEF_STAAMP99077, DEF_STAANQ6GHZ4, DEF_STAAR
Q6GAC3, DEF_STAASP68826, DEF_STAAUQ8NX78, DEF_STAAW
Q5HQ78, DEF_STAEQQ8CPN4, DEF_STAESQ3JZ45, DEF_STRA1
Q8E378, DEF_STRA3Q8DXF6, DEF_STRA5C0M9E1, DEF_STRE4
B4U576, DEF_STREMA8AV30, DEF_STRGCB4SKH7, DEF_STRM5
B2FIR4, DEF_STRMKQ8DWC2, DEF_STRMUP68771, DEF_STRP1
Q04JP7, DEF_STRP2P0DC96, DEF_STRP3B5E5U9, DEF_STRP4
Q5X9V1, DEF_STRP6C1C851, DEF_STRP7Q8NZB7, DEF_STRP8
Q1J9R7, DEF_STRPBQ1JJW6, DEF_STRPCQ1JEV7, DEF_STRPD
Q1J4M3, DEF_STRPFA2RGI0, DEF_STRPGB1ICN7, DEF_STRPI
B8ZL02, DEF_STRPJQ48R93, DEF_STRPMQ9F2F0, DEF_STRPN
P0DC97, DEF_STRPQB2IQS1, DEF_STRPSB5XIL1, DEF_STRPZ
Q8DP79, DEF_STRR6A4W418, DEF_STRS2C0MFA6, DEF_STRS7
A4VXS1, DEF_STRSYQ5M1R9, DEF_STRT1Q5M6B0, DEF_STRT2
Q03MP6, DEF_STRTDB9DTD6, DEF_STRU0C1CF38, DEF_STRZJ
C1CLF5, DEF_STRZPC1CQR2, DEF_STRZTA4VFH8, DEF_STUS1
Q67PR5, DEF_SYMTHA0LEJ7, DEF_SYNFMB1XJP0, DEF_SYNP2
A5GQU9, DEF_SYNR3Q0I7A5, DEF_SYNS3Q3AZU8, DEF_SYNS9
Q3AHC4, DEF_SYNSCQ0AXL3, DEF_SYNWWP73441, DEF_SYNY3
C5BKQ0, DEF_TERTTP96113, DEF_THEMAB9K7G9, DEF_THENN
A5ILS1, DEF_THEP1B0KA11, DEF_THEP3B0K292, DEF_THEPX
B9L0C1, DEF_THERPB1LB14, DEF_THESQQ72H33, DEF_THET2
Q5SLH2, DEF_THET8P43522, DEF_THETHQ8DIB4, DEF_THEVB
B5YIL7, DEF_THEYDB8GU11, DEF_THISHC4L7Y4, DEF_TOLAT
O83738, DEF_TREPAB2S3Z6, DEF_TREPSQ83HQ3, DEF_TROW8
Q83GH8, DEF_TROWTB1AJA6, DEF_UREP2Q9PQ25, DEF_UREPA
A7N121, DEF_VIBC1Q8D258, DEF_WIGBRQ73IJ6, DEF_WOLPM
B3CMB1, DEF_WOLPPQ7M7M2, DEF_WOLSUQ5GTG9, DEF_WOLTR
C0R5A2, DEF_WOLWRB2I8S4, DEF_XYLF2P63917, DEF_XYLFA
B0U4M4, DEF_XYLFMP63918, DEF_XYLFTA1JRZ1, DEF_YERE8
A7FNK2, DEF_YERP3Q1C2X9, DEF_YERPAB2K504, DEF_YERPB
Q8ZJ79, DEF_YERPEA9R927, DEF_YERPGQ1CCX6, DEF_YERPN
A4TH23, DEF_YERPPQ664V4, DEF_YERPSB1JJH8, DEF_YERPY
Q9REQ2, DEF_ZYMMO

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All UniProtKB/Swiss-Prot entries referenced in this entry, with possibility to download in different formats, align etc.
All ENZYME / UniProtKB/Swiss-Prot entries corresponding to 3.5.1.-
All ENZYME / UniProtKB/Swiss-Prot entries corresponding to 3.5.-.-
All ENZYME / UniProtKB/Swiss-Prot entries corresponding to 3.-.-.-